Ryosuke Omoriresearchmap個人ページ

Last Updated : 2017/12/12

Basic Information

Profile

Affiliation
Research Center for Zoonosis Control Division of Bioinformatics
Faculty of Veterinary Medicine
Job TitleAssistant Professor 
Degree
Ph.D
E-mail
URL
Research funding number
  • My research interest is mathematical modelling of infectious diseases and its application for controlling infectious diseases. Especially, I am interested in
    i) complex interactions between epidemics of different pathogens, i.e., immune cross-reactivity, non-specific immunity etc.
    ii) the effect of exogenous factors to the epidemic, i.e., the seasonality of epidemics etc.
    iii) the transmission process of infectious diseases on the realistic networks.
    iV) the co-evolution of host and pathogen.

Research Areas

Biological science / Evolutionary biology(数理生物学)
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Biological science / Evolutionary biology(数理生物学)

Career

2017/02
-
Today
Editorial board member of Scientific Reports
2015/10
-
Today
JST(PRESTO researcher)
2014/07
-
Today
Research Center for Zoonosis Control, Hokkaido Univeristy(Assistant Professor)
2013/05
-
2014/07
Weill Cornell Medical College in Qatar(Post-doctoral associate)
2012/04
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2013/04
The University of Hong Kong(Post-doctoral fellow)
2009/04
-
2012/03
Kyushu University(Ph.D student)
2010/04
-
2011/03
The University of Edinburgh(Visiting PhD. student)
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Employmentclose
2017/02
-
Today
Editorial board member of Scientific Reports
2015/10
-
Today
JST(PRESTO researcher)
2014/07
-
Today
Research Center for Zoonosis Control, Hokkaido Univeristy(Assistant Professor)
2013/05
-
2014/07
Weill Cornell Medical College in Qatar(Post-doctoral associate)
2012/04
-
2013/04
The University of Hong Kong(Post-doctoral fellow)
2009/04
-
2012/03
Kyushu University(Ph.D student)
2010/04
-
2011/03
The University of Edinburgh(Visiting PhD. student)

Research Activities

Papers

HIV and Herpes Simplex Virus Type 2 Epidemiologic Synergy: Misguided Observational Evidence?
Ryosuke Omori
Sexually Transmitted Infections 2017/12
Tajima's D and site-specific nucleotide frequency in a population during an infectious disease outbreak
Ryosuke Omori, Jianhong Wu
SIAM Journal on Applied Mathematics 77(6) 2156-2171 2017/12
Non-paternity and half-siblingships as objective measures of extramarital sex: Mathematical modeling and simulations
Ryosuke Omori, Nico Nagelkerke, Laith J. Abu-Raddad
BioMed Research International 2017(2017) 2017/08
Evaluation of bovine viral diarrhea virus control strategies in dairy herds in Hokkaido, Japan using stochastic modelling
Sekiguchi S, Presi P, Omori R, Stärk K, Schuppers M, Isoda N, Yoshikawa Y, Umemura T, Nakayama H, Fujii Y, Sakoda Y
Transboundary and Emerging Diseases 2017(00) 1-10 2017/08
Sexual network drivers of HIV and herpes simplex virus type 2 (HSV-2) transmission
Ryosuke Omori, Laith J. Abu-Raddad
AIDS 31(12) 1721-1732 2017/07
Modelling infectious diseases with relapse: a case study of HSV-2
Jinliang Wang, Xiaoqing Yu, Heidi L. Tessmer, Toshikazu Kuniya, Ryosuke Omori
Theoretical Biology and Medical Modelling 14(13) 2017/07
Inferring epidemiological dynamics of infectious diseases using Tajima's D statistic on nucleotide sequences of pathogens
Kiyeon Kim, Ryosuke Omori, Kimihito Ito
Epidemics 2017
Estimating the Lineage Dynamics of Human Influenza B Viruses
Mayumbo Nyirenda, Ryosuke Omori, Heidi L. Tessmer, Hiroki Arimura, Kimihito Ito
PLOS ONE 11(11) e0166107 2016/11
Population sexual behavior and HIV prevalence in sub-Saharan Africa: Missing links?
Ryosuke Omori, Laith J. Abu-Raddad
International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 44 1-3 2016/03
Host-Specific and Segment-Specific Evolutionary Dynamics of Avian and Human Influenza A Viruses: A Systematic Review.
Kiyeon Kim, Ryosuke Omori, Keisuke Ueno, Sayaka Iida, Kimihito Ito
PLOS ONE 11(1) e0147021 2016/01
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HIV and Herpes Simplex Virus Type 2 Epidemiologic Synergy: Misguided Observational Evidence?
Ryosuke Omori
Sexually Transmitted Infections 2017/12
Tajima's D and site-specific nucleotide frequency in a population during an infectious disease outbreak
Ryosuke Omori, Jianhong Wu
SIAM Journal on Applied Mathematics 77(6) 2156-2171 2017/12
Non-paternity and half-siblingships as objective measures of extramarital sex: Mathematical modeling and simulations
Ryosuke Omori, Nico Nagelkerke, Laith J. Abu-Raddad
BioMed Research International 2017(2017) 2017/08
Evaluation of bovine viral diarrhea virus control strategies in dairy herds in Hokkaido, Japan using stochastic modelling
Sekiguchi S, Presi P, Omori R, Stärk K, Schuppers M, Isoda N, Yoshikawa Y, Umemura T, Nakayama H, Fujii Y, Sakoda Y
Transboundary and Emerging Diseases 2017(00) 1-10 2017/08
Sexual network drivers of HIV and herpes simplex virus type 2 (HSV-2) transmission
Ryosuke Omori, Laith J. Abu-Raddad
AIDS 31(12) 1721-1732 2017/07
Modelling infectious diseases with relapse: a case study of HSV-2
Jinliang Wang, Xiaoqing Yu, Heidi L. Tessmer, Toshikazu Kuniya, Ryosuke Omori
Theoretical Biology and Medical Modelling 14(13) 2017/07
Inferring epidemiological dynamics of infectious diseases using Tajima's D statistic on nucleotide sequences of pathogens
Kiyeon Kim, Ryosuke Omori, Kimihito Ito
Epidemics 2017
Estimating the Lineage Dynamics of Human Influenza B Viruses
Mayumbo Nyirenda, Ryosuke Omori, Heidi L. Tessmer, Hiroki Arimura, Kimihito Ito
PLOS ONE 11(11) e0166107 2016/11
Population sexual behavior and HIV prevalence in sub-Saharan Africa: Missing links?
Ryosuke Omori, Laith J. Abu-Raddad
International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 44 1-3 2016/03
Host-Specific and Segment-Specific Evolutionary Dynamics of Avian and Human Influenza A Viruses: A Systematic Review.
Kiyeon Kim, Ryosuke Omori, Keisuke Ueno, Sayaka Iida, Kimihito Ito
PLOS ONE 11(1) e0147021 2016/01
Tracking the evolution of polymerase genes of influenza A viruses during interspecies transmission between avian and swine hosts
Nipawit Karnbunchob, Ryosuke Omori, Heidi Tessmer, Kimihito Ito
Frontiers in Microbiology 2016
The determinant of periodicity in Mycoplasma pneumoniae incidence: an insight from mathematical modelling.
Ryosuke Omori, Yukihiko Nakata, Heidi L. Tessmer, Satowa Suzuki, Keigo Shibayama
Scientific Reports 5 14473 2015/09
Dynamics of non-cohabiting sex partnering in sub-Saharan Africa: a modelling study with implications for HIV transmission
Ryosuke Omori, Hiam Chemaitelly, Laith Abu-Raddad
Sexually Transmitted Infections 91(6) 451-457 2015/05
Delay equation formulation for an epidemic model with waning immunity: an application to mycoplasma pneumoniae
Yukihiko Nakata and Ryosuke Omori
IFAC-PapersOnLine 48(18) 132-135 2015
Timing of the emergence of new successful viral strains in seasonal influenza
Ryosuke Omori, Akira Sasaki
Journal of Theoretical Biology 329(21) 32-38 2013/04
Incubation period as part of the case definition of severe respiratory illness caused by a novel coronavirus.
Hiroshi Nishiura, Kenji Mizumoto, Keisuke Ejima, Yi Zhong, Ben J. Cowling, Ryosuke Omori
Eurosurveillance 17(42) 2012/10
Real-time Investigation of Measles Epidemics with Estimate of Vaccine Efficacy
Keisuke Ejima, Ryosuke Omori, Kazuyuki Aihara, Hiroshi Nishiura
International Journal of Biological Sciences 8(5) 620-629 2012/04
The time required to estimate the case fatality ratio of influenza using only the tip of an iceberg: Joint estimation of the virulence and the transmission potential
Keisuke Ejima, Ryousuke Omori, Benjamin Cowling, Kazuyuki Aihara, and Hiroshi Nishiura
Computational and Mathematical Methods in Medicine 2012(2012) 2012/02
How is vaccine effectiveness scaled by the transmission dynamics of interacting pathogen strains with cross-protective immunity?
Ryosuke Omori, Ben J. Cowling, Hiroshi Nishiura
PLoS ONE 7(11) 2012
Disrupting seasonality to control disease outbreaks: the case of koi herpes virus
Ryosuke Omori, Ben Adams
Journal of Theoretical Biology 271(1) 159-165 2011/02
Theoretical basis to measure the impact of short-lasting control of an infectious disease on the epidemic peak
Ryosuke Omori, Hiroshi Nishiura
Theoretical Biology and Medical Modelling 2011/01
Coexistence conditions for strains of influenza with immune cross-reaction
Ryosuke Omori, Ben Adams, Akira Sasaki
Journal of Theoretical Biology 262(1) 48-57 2010/01
An epidemiological analysis of the foot-and-mouth disease epidemic in Miyazaki, Japan, 2010.
Hiroshi Nishiura, Ryosuke Omori
Transboundary and Emerging Diseases 57(6) 396-403 2010

Conferences

Timing of emergence and epidemic peak of novel influenza strains
Ryosuke Omori
2010/06
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Timing of emergence and epidemic peak of novel influenza strains
Ryosuke Omori
2010/06

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