Shibukawa Atsushi

Research Institute for Electronic Science Biology and Life SciencesAssociate Professor
Last Updated :2025/06/07

■Researcher basic information

Degree

  • Mar. 2014

Researchmap personal page

Research Keyword

  • Holography, Wavefront shaping, Optogenetics, Rhodopsin

Research Field

  • Manufacturing technology (mechanical, electrical/electronic, chemical engineering), Electronic devices and equipment

Educational Organization

■Research activity information

Awards

  • Dec. 2024, 浜松電子工学奨励会, 高柳研究奨励賞               
    超高速かつ超広視野な回折限界集光技術の開発
    渋川 敦史
  • Feb. 2021, 公益財団法人コニカミノルタ科学技術振興財団, 令和2年度コニカミノルタ画像科学奨励賞               
    世界最速一次元空間光変調器の開発と光波面シェイピングへの応用
    渋川 敦史

Papers

  • Large-volume focus control at 10 MHz refresh rate via fast line-scanning amplitude-encoded scattering-assisted holography
    Atsushi Shibukawa, Ryota Higuchi, Gookho Song, Hideharu Mikami, Yuki Sudo, Mooseok Jang
    Nature Communications, 15, 1, Springer Science and Business Media LLC, 08 Apr. 2024, [Peer-reviewed], [Lead author]
    Scientific journal, Abstract

    The capability of focus control has been central to optical technologies that require both high temporal and spatial resolutions. However, existing varifocal lens schemes are commonly limited to the response time on the microsecond timescale and share the fundamental trade-off between the response time and the tuning power. Here, we propose an ultrafast holographic focusing method enabled by translating the speed of a fast 1D beam scanner into the speed of the complex wavefront modulation of a relatively slow 2D spatial light modulator. Using a pair of a digital micromirror device and a resonant scanner, we demonstrate an unprecedented refresh rate of focus control of 31 MHz, which is more than 1,000 times faster than the switching rate of a digital micromirror device. We also show that multiple micrometer-sized focal spots can be independently addressed in a range of over 1 MHz within a large volume of 5 mm × 5 mm × 5.5 mm, validating the superior spatiotemporal characteristics of the proposed technique – high temporal and spatial precision, high tuning power, and random accessibility in a three-dimensional space. The demonstrated scheme offers a new route towards three-dimensional light manipulation in the 100 MHz regime.
  • Detection of Membrane Potential-Dependent Rhodopsin Fluorescence Using Low-Intensity Light Emitting Diode for Long-Term Imaging
    Shiho Kawanishi, Keiichi Kojima, Atsushi Shibukawa, Masayuki Sakamoto, Yuki Sudo
    ACS Omega, 8, 4826, 4834, American Chemical Society (ACS), 25 Jan. 2023, [Peer-reviewed], [International Magazine]
    English, Scientific journal
  • Functional expression of the eukaryotic proton pump rhodopsin OmR2 in Escherichia coli and its photochemical characterization.
    Masuzu Kikuchi, Keiichi Kojima, Shin Nakao, Susumu Yoshizawa, Shiho Kawanishi, Atsushi Shibukawa, Takashi Kikukawa, Yuki Sudo
    Scientific reports, 11, 1, 14765, 14765, 20 Jul. 2021, [Peer-reviewed], [International Magazine]
    English, Scientific journal, Microbial rhodopsins are photoswitchable seven-transmembrane proteins that are widely distributed in three domains of life, archaea, bacteria and eukarya. Rhodopsins allow the transport of protons outwardly across the membrane and are indispensable for light-energy conversion in microorganisms. Archaeal and bacterial proton pump rhodopsins have been characterized using an Escherichia coli expression system because that enables the rapid production of large amounts of recombinant proteins, whereas no success has been reported for eukaryotic rhodopsins. Here, we report a phylogenetically distinct eukaryotic rhodopsin from the dinoflagellate Oxyrrhis marina (O. marina rhodopsin-2, OmR2) that can be expressed in E. coli cells. E. coli cells harboring the OmR2 gene showed an outward proton-pumping activity, indicating its functional expression. Spectroscopic characterization of the purified OmR2 protein revealed several features as follows: (1) an absorption maximum at 533 nm with all-trans retinal chromophore, (2) the possession of the deprotonated counterion (pKa = 3.0) of the protonated Schiff base and (3) a rapid photocycle through several distinct photointermediates. Those features are similar to those of known eukaryotic proton pump rhodopsins. Our successful characterization of OmR2 expressed in E. coli cells could build a basis for understanding and utilizing eukaryotic rhodopsins.
  • Green-Sensitive, Long-Lived, Step-Functional Anion Channelrhodopsin-2 Variant as a High-Potential Neural Silencing Tool
    Keiichi Kojima, Natsuki Miyoshi, Atsushi Shibukawa, Srikanta Chowdhury, Masaki Tsujimura, Tomoyasu Noji, Hiroshi Ishikita, Akihiro Yamanaka, Yuki Sudo
    The Journal of Physical Chemistry Letters, 11, 15, 6214, 6218, American Chemical Society (ACS), 22 Jul. 2020, [Peer-reviewed], [International Magazine]
    English, Scientific journal, Anion channelrhodopsin-2 (GtACR2) was identified from the alga Guillardia theta as a light-gated anion channel, providing a powerful neural silencing tool for optogenetics. To expand its molecular properties, we produced here GtACR2 variants by strategic mutations on the four residues around the retinal chromophore (i.e., R129, G152, P204, and C233). After the screening with the Escherichia coli expression system, we estimated spectral sensitivities and the anion channeling function by using the HEK293 expression system. Among the mutants, triple (R129M/G152S/C233A) and quadruple (R129M/G152S/P204T/C233A) mutants showed the significantly red-shifted absorption maxima (λmax = 498 and 514 nm, respectively) and the long-lived channel-conducting states (the half-life times were 3.4 and 5.4 s, respectively). In addition, both mutants can be activated and inactivated by different wavelengths, representing their step-functional ability. We nicknamed the quadruple mutant "GLaS-ACR2" from its green-sensitive, long-lived, step-functional properties. The unique characteristics of GLaS-ACR2 suggest its high potential as a neural silencing tool.
  • The Unlimited Potential of Microbial Rhodopsins as Optical Tools               
    K. Kojima, A. Shibukawa, Y. Sudo
    Biochemistry, 59, 3, 218, 229, Dec. 2019, [Peer-reviewed], [Invited]
    English, Scientific journal
  • Quantitation of the neural silencing activity of anion channelrhodopsins in Caenorhabditis elegans and their applicability for long-term illumination               
    T. Yamanashi, M. Maki, K. Kojima, A. Shibukawa, T. Tsukamoto, S. Chowdhury, A. Yamanaka, S. Takagi, Y. Sudo
    Scientific Reports, 9, 7863, May 2019, [Peer-reviewed]
    English, Scientific journal
  • Photochemical Characterization of a New Heliorhodopsin from the Gram-Negative Eubacterium Bellilinea caldifistulae (BcHeR) and Comparison with Heliorhodopsin-48C12               
    A. Shibukawa, K. Kojima, Y. Nakajima, Y. Nishimura, S. Yoshizawa, Y. Sudo
    Biochemistry, 58, 26, 2934, 2943, May 2019, [Peer-reviewed], [Lead author]
    English, Scientific journal
  • Virtual phase conjugation based optical tomography for single-shot three-dimensional imaging               
    Yuta Goto, Atsushi Okamoto, Atsushi Shibukawa, Kazuhisa Ogawa, Akihisa Tomita
    Optics Express, 26, 3779, 3790, Feb. 2018, [Peer-reviewed]
    English, Scientific journal
  • Wavefront engineering with disorder-engineered metasurfaces
    Mooseok Jang†, Yu Horie†, Atsushi Shibukawa†, Joshua Brake, Yan Liu, Seyedeh Mahsa Kamali, Amir Arbabi, HaowenRuan, Andrei Faraon, Changhuei Yang
    Nature Photonics, 12, 84, 90, Feb. 2018, [Peer-reviewed], [Lead author]
    English, Scientific journal
  • Glare suppression by coherence gated negation
    Edward Haojiang Zhou, Atsushi Shibukawa, Joshua Brake, Haowen Ruan, Changhuei Yang
    OPTICA, 3, 10, 1107, 1113, Oct. 2016, [Peer-reviewed]
    English, Scientific journal
  • Towards new applications using capillary waveguides
    Nicolino Stasio†, Atsushi Shibukawa†, Ioannis N, Papadopoulos, Salma Farahi, Olivier Simandoux, Jean-Pierre Huignard, Emmanuel Bossy, Christophe Moser, Demetri Psaltis
    BIOMEDICAL OPTICS EXPRESS, 6, 12, 4619, 4631, Dec. 2015, [Peer-reviewed], [Lead author]
    English, Scientific journal
  • Two-channel algorithm for single-shot, high-resolution measurement of optical wavefronts using two image sensors
    Jin Nozawa, Atsushi Okamoto, Atsushi Shibukawa, Masanori Takabayashi, Akihisa Tomita
    APPLIED OPTICS, 54, 29, 8644, 8652, Oct. 2015, [Peer-reviewed]
    English, Scientific journal
  • Background light reduction method with a double phase conjugate mirror and a phase plate for optical inter-satellite communications
    Kaori Nishimaki, Atsushi Okamoto, Atsushi Shibukawa, Akihisa Tomita, Yoshihisa Takayama, Masatoshi Bunsen
    JAPANESE JOURNAL OF APPLIED PHYSICS, 53, 8, 08MB13, Jul. 2014, [Peer-reviewed]
    English, Scientific journal
  • Dynamically Reconfigurable Characteristics of a Double Phase Conjugate Mirror Using Sn2P2S6 Crystals and Their Application to Optical Inter-Satellite Communication
    Kaori Nishimaki, Atsushi Okamoto, Atsushi Shibukawa, Masanori Takabayashi, Akihisa Tomita, Yoshihisa Takayama
    OPTICAL REVIEW, 21, 3, 415, 424, May 2014, [Peer-reviewed]
    English, Scientific journal
  • Digital phase conjugate mirror by parallel arrangement of two phase-only spatial light modulators
    Atsushi Shibukawa, Atsushi Okamoto, Yuta Goto, Satoshi Honma, Akihisa Tomita
    OPTICS EXPRESS, 22, 10, 11918, 11929, May 2014, [Peer-reviewed], [Lead author]
    English, Scientific journal
  • Study on ultra-high density holographic memory using optical complex-amplitude control technique               
    Atsushi Shibukawa
    Hokkaido University, Mar. 2014, [Peer-reviewed], [Invited]
    Japanese, Doctoral thesis
  • Spatial cross modulation method using a random diffuser and phase-only spatial light modulator for constructing arbitrary complex fields
    Atsushi Shibukawa, Atsushi Okamoto, Masanori Takabayashi, Akihisa Tomita
    OPTICS EXPRESS, 22, 4, 3968, 3982, Feb. 2014, [Peer-reviewed], [Lead author]
    English, Scientific journal
  • Reconfigurable spatial mode conversion using a phase-type spatial light modulator               
    Tomohiro Maeda, Atsushi Okamoto, Yuki Hirasaki, Atsushi Shibukawa, Akihisa Tomita
    2014 OptoElectronics and Communication Conference, OECC 2014 and Australian Conference on Optical Fibre Technology, ACOFT 2014, 517, 518, IEEE Computer Society, 2014
    English, International conference proceedings
  • Double-Referential Holography and Spatial Quadrature Amplitude Modulation
    Keisuke Zukeran, Atsushi Okamoto, Masanori Takabayashi, Atsushi Shibukawa, Kunihiro Sato, Akihisa Tomita
    JAPANESE JOURNAL OF APPLIED PHYSICS, 52, 9, 09LD13, Sep. 2013, [Peer-reviewed]
    English, Scientific journal
  • Digital Image Diffusion Technique for Suppressing Interpage Crosstalk in Holographic Data Storage
    Atsushi Shibukawa, Atsushi Okamoto, Yuta Wakayama, Akihisa Tomita, Hisatoshi Funakoshi, Kunihiro Sato
    JAPANESE JOURNAL OF APPLIED PHYSICS, 52, 9, 09LD03, Sep. 2013, [Peer-reviewed], [Lead author]
    English, Scientific journal
  • Multilayer Collinear Holographic Memory for Ultra-High Density Recording               
    Atsushi Okamoto, Atsushi Shibukawa
    光学, 40, 11, 591, 593, Nov. 2011, [Invited]
    Japanese, Scientific journal
  • Multilayer Collinear Holographic Memory with Movable Random Phase Mask
    Atsushi Shibukawa, Atsushi Okamoto, Akihisa Tomita, Masanori Takabayashi, Kunihiro Sato
    JAPANESE JOURNAL OF APPLIED PHYSICS, 50, 9, 09ME10, Sep. 2011, [Peer-reviewed]
    English, Scientific journal
  • Evaluation of the performance in multilayer collinear holographic memory with movable random phase mask
    Atsushi Shibukawa, Atsushi Okamoto, Akihisa Tomita, Masanori Takabayashi, Kunihiro Sato, Masatoshi Bunsen
    Optics InfoBase Conference Papers, Optical Society of America (OSA), 2011
    English, International conference proceedings
  • High-speed full motion analysis based on FFT-BPM for collinear holographic memory
    Hisatoshi Funakoshi, Atsushi Okamoto, Masanori Takabayashi, Yuta Wakayama, Atsushi Shibukawa
    Optics InfoBase Conference Papers, Optical Society of America (OSA), 2011
    English, International conference proceedings
  • Double-referential collinear holographic memory and spatial quadrature amplitude modulation               
    Atsushi Okamoto, Keisuke Zukeran, Atsushi Shibukawa, Masanori Takabayashi
    Optics InfoBase Conference Papers, Optical Society of American (OSA), 2011
    English, International conference proceedings

Other Activities and Achievements

Lectures, oral presentations, etc.

  • Wavefront shaping-assisted subcellular-resolution focus scanning over centimeter-scale field-of-view               
    Atsushi Shibukawa
    The 13th Asia-Pacific Laser Symposium 2025, 16 May 2025, English, Invited oral presentation
    12 May 2025 - 17 May 2025, [Invited]
  • Wavefront shaping-assisted multi-regional two-photon microscopy for recording distributed neuronal activity across the mouse cortex               
    Hyojeong Shon, Atsushi Shibukawa, Hideharu Mikami
    Focus on microscopy 2025, 15 Apr. 2025, English, Poster presentation
  • Accelerating complex wavefront shaping with line-scanning holography using digital micromirror devices               
    Mooseok Jang, Atsushi Shibukawa
    SPIE Photonics West, English, Invited oral presentation
    25 Jan. 2025 - 30 Jan. 2025, [Invited]
  • Ultra-wide field-of-view optical focus control with high-speed complex wavefront shaping               
    Atsushi Shibukawa
    The 85th JSAP Autumn Meeting 2024, Sep. 2024, English, Invited oral presentation
    16 Sep. 2024 - 20 Sep. 2024, [Invited]
  • Wavefront shaping at 10 MHz refresh rate by exploiting the scan speed of a resonant scanner               
    Atsushi Shibukawa, Yuki Sudo, Hideharu Mikami, Mooseok Jang
    The Pacific Rim Conference on Lasers and Electro-Optics (CLEO-PR) 2024, Aug. 2024, English, Invited oral presentation
    [Invited]
  • Random-access focus scanning at 10MHz refresh rate by a scattering-assisted lens based on an ultrafast 1D spatial light modulation               
    Atsushi Shibukawa, Yuki Sudo, Hideharu Mikami, Mooseok Jang
    Optics & Photonics Japan, 28 Nov. 2023, Japanese, Nominated symposium
    27 Nov. 2023 - 29 Nov. 2023, [Invited]
  • Development of ultra-large field-of-view focusing lens by complex wavefront compensation towards mouse brain cortex-wide imaging               
    Atsushi Shibukawa, Hyojeong Shon, Hideharu Mikami
    Optics & Photonics Japan, 27 Nov. 2023, Japanese, Poster presentation
    27 Nov. 2023 - 29 Nov. 2023
  • LED光源を用いたアーキロドプシン3(AR3)による長時間膜電位計測法の確立               
    川西 志歩, 小島 慧一, 渋川 敦史, 坂本 雅行, 須藤 雄気
    第43回生体膜と薬物の相互作用シンポジウム, 07 Oct. 2022, English
  • LED光源を用いた微生物型ロドプシンAR3による膜電位の長時間イメージング               
    川西 志歩, 小島 慧一, 渋川 敦史, 坂本 雅行, 須藤 雄気
    第60回日本生物物理学会年会, 29 Sep. 2022, English, Poster presentation
  • Megahertz Wavefront Control through Scattering Media               
    Atsushi Shibukawa, Hideharu Mikami, Mooseok Jang, Yuki Sudo
    The 22nd RIES-Hokudai International Symposium, 06 Dec. 2021, English, Poster presentation
  • コンプレックス波面整形による光散乱との共生               
    渋川敦史
    コニカミノルタカレッジ「先端光学」, 02 Dec. 2021, Japanese, Public discourse
    [Invited]
  • Ultrafast wavefront control involving scattering media               
    Atsushi Shibukawa, Jang Mooseok, Hideharu Mikami, Yuki Sudo
    International Symposium on Imaging, Sensing, and Optical Memory 2021, 04 Oct. 2021, English, Invited oral presentation
    [Invited]
  • LED光源を用いたアーキロドプシン3由来の膜電位感受性蛍光の観察               
    川西志歩, 小島慧一, 渋川敦史, 坂本雅行, 須藤雄気
    第12回日本生物物理学会 中国四国支部大会, 22 May 2021, Japanese, Poster presentation

Affiliated academic society

  • Optical Society of Japan               

Industrial Property Rights

  • 光変調装置及び集光装置               
    Patent right, 渋川 敦史, ムサク ジャング, 渋川 敦史(北海道大学), ムサク ジャング(韓国科学技術院)
    特願PCT/JP2022/035081, 21 Sep. 2022
    WOP2021-056-WO01
  • 光変調装置及び集光装置               
    Patent right, 渋川 敦史, 須藤 雄気, ムサク ジャング, 渋川 敦史(北海道大学), 須藤 雄気(岡山大学), ムサク ジャング(韓国科学技術院)
    特願2021-153788, 22 Sep. 2021
  • HIGHLY SCATTERING METASURFACE PHASE MASKS FOR COMPLEX WAVEFRONT ENGINEERING               
    Patent right, JANG, Mooseok, US HORIE, Yu, US SHIBUKAWA, Atsushi, US FARAON, Andrei, US YANG, Changhuei, US
    特願PCT/US2018/028359, 19 Apr. 2018
    特開WO/2018/195309, 25 Oct. 2018
  • 複素振幅画像表示方法、散乱位相画像生成装置および散乱位相画像生成方法               
    Patent right, 岡本淳, 渋川敦史, 後藤優太
    特願2013-168989, 15 Aug. 2013
    特開2015-036799, 23 Feb. 2015
    特許第6230047号
    27 Oct. 2017
  • ノイズ除去方法およびノイズ除去装置、記録再生方法および記録再生装置、ならびに、画像計測方法および画像計測装置               
    Patent right, 岡本 淳, 渋川 敦史, 若山 雄太
    特願2012-213102, 26 Sep. 2012
    特開2014-067468, 17 Apr. 2014
    特許第6029167号
    28 Oct. 2016
  • 複素振幅像生成装置および複素振幅像生成方法               
    Patent right, 岡本 淳, 渋川敦史
    特願2013-233492, 10 Nov. 2014
    特開WO2015068834, 14 May 2015
  • HOLOGRAPHIC MEMORY RECORDING METHOD AND REPRODUCTION METHOD, AND HOLOGRAPHIC MEMORY RECORDING DEVICE AND REPRODUCTION DEVICE               
    Patent right, OKAMOTO, Atsushi, ZUKERAN, Keisuke, null TAKABAYASHI, Masanori, SHIBUKAWA, Atsushi
    特願PCT/JP2012/004455, 07 Oct. 2012
    特開WO/2013/008453, 17 Jan. 2013