SEARCH
Search Details
NAKADA Takashi
| Faculty of Science Biological Sciences Biodiversity | Lecturer |
Researcher basic information
■ Degree■ URL
researchmap URLホームページURL■ Various IDs
Researcher number
- 10548994
- Bachelor's degree program, School of Science
- Master's degree program, Graduate School of Science
- Doctoral (PhD) degree program, Graduate School of Science
Research activity information
■ Papers- Heterochlamydomonas kakosmos comb. nov. (Volvocales, Chlorophyceae) and its synonymy with H. callunae
Hotaka Matsuoka; Takashi Nakada
Phycological Research, 10 Apr. 2026
Scientific journal - Studies on the Subheading “Algae” (“Seaweeds” and “Waterweeds”) in the Main Heading “Vegetables” in Wamyo Ruijusho
仲田崇志
植物研究雑誌(Web), 101, 1, 2026 - Aphelidium parallelum, s p. nov., a new aphelid parasitic on selenastracean green algae
Kensuke Seto; Takashi Nakada; Yuuhiko Tanabe; Masaki Yoshida; Maiko Kagami
MYCOLOGIA, 114, 3, 544, 555, 04 May 2022
English, Scientific journal - Phytoplankton species abundance in Tokyo Bay (Japan) from 1998 to 2019
Takashi Nakada; Toshiya Katano; Keigo Hashimoto; Maiko Kagami
Ecological Research, Sep. 2021
Scientific journal - A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems.
Motoki Kayama; Jun-Feng Chen; Takashi Nakada; Yoshiki Nishimura; Toshiharu Shikanai; Tomonori Azuma; Hideaki Miyashita; Shinichi Takaichi; Yuichiro Kashiyama; Ryoma Kamikawa
BMC biology, 18, 1, 126, 126, 16 Sep. 2020, [International Magazine]
English, Scientific journal, BACKGROUND: Plastid electron transport systems are essential not only for photosynthesis but also for dissipating excess reducing power and sinking excess electrons generated by various redox reactions. Although numerous organisms with plastids have lost their photoautotrophic lifestyles, there is a spectrum of known functions of remnant plastids in non-photosynthetic algal/plant lineages; some of non-photosynthetic plastids still retain diverse metabolic pathways involving redox reactions while others, such as apicoplasts of apicomplexan parasites, possess highly reduced sets of functions. However, little is known about underlying mechanisms for redox homeostasis in functionally versatile non-photosynthetic plastids and thus about the reductive evolution of plastid electron transport systems. RESULTS: Here we demonstrated that the central component for plastid electron transport systems, plastoquinone/plastoquinol pool, is still retained in a novel strain of an obligate heterotrophic green alga lacking the photosynthesis-related thylakoid membrane complexes. Microscopic and genome analyses revealed that the Volvocales green alga, chlamydomonad sp. strain NrCl902, has non-photosynthetic plastids and a plastid DNA that carries no genes for the photosynthetic electron transport system. Transcriptome-based in silico prediction of the metabolic map followed by liquid chromatography analyses demonstrated carotenoid and plastoquinol synthesis, but no trace of chlorophyll pigments in the non-photosynthetic green alga. Transient RNA interference knockdown leads to suppression of plastoquinone/plastoquinol synthesis. The alga appears to possess genes for an electron sink system mediated by plastid terminal oxidase, plastoquinone/plastoquinol, and type II NADH dehydrogenase. Other non-photosynthetic algae/land plants also possess key genes for this system, suggesting a broad distribution of an electron sink system in non-photosynthetic plastids. CONCLUSION: The plastoquinone/plastoquinol pool and thus the involved electron transport systems reported herein might be retained for redox homeostasis and might represent an intermediate step towards a more reduced set of the electron transport system in many non-photosynthetic plastids. Our findings illuminate a broadly distributed but previously hidden step of reductive evolution of plastid electron transport systems after the loss of photosynthesis. - Taxonomy and nomenclature of the recently published chlamydomonad genera Ostravamonas and Paludistella (Volvocales, Chlorophyceae)
TAKASHI NAKADA; HANI SUSANTI
Phytotaxa, 23 Jun. 2020
Scientific journal - Chlorococcum turfosum comb. nov. (Volvocales, Chlorophyceae) and visualization of chimeric sequences
Takashi Nakada; Shin Watanabe; Louise A. Lewis; Masaru Tomita
Phycological Research, Jul. 2019
Scientific journal - Improved taxon sampling and multigene phylogeny of unicellular chlamydomonads closely related to the colonial volvocalean lineage Tetrabaenaceae-Goniaceae-Volvocaceae (Volvocales, Chlorophyceae).
Takashi Nakada; Yudai Tsuchida; Masaru Tomita
Molecular phylogenetics and evolution, 130, 1, 8, Jan. 2019, [International Magazine]
English, Scientific journal, In the green algal order Volvocales (Chlorophyceae), flagellate colonial forms have evolved at least four times. One of these colonial lineages, Tetrabaenaceae-Goniaceae-Volvocaceae (TGV), which belongs to the clade Reinhardtinia, is closely related to several unicellular chlamydomonads in the genera Chlamydomonas and Vitreochlamys. However, the unicellular sister of TGV has not been specified. Here, the largest ever 18S rRNA phylogenetic tree of Reinhardtinia was constructed including several newly isolated chlamydomonads, and a clade (core-Reinhardtinia) including 32 unicellular lineages and three colonial families were recognized. Interrelationships within core-Reinhardtinia were barely resolved in the tree, and therefore combined 18S-atpB-psaA-psaB-psbC-rbcL gene phylogenetic analyses were performed with selected representatives of 29 of the 32 unicellular lineages and three colonial families. The 29 unicellular lineages were clustered into five metaclades and an unassigned lineage; the metaclade that includes Chlamydomonas pila was resolved, with moderate support, as the sister clade to TGV. To examine possible biases from specific gene(s), long-branch taxa, and the heterogeneous base composition, phylogenetic analyses using several smaller data sets were also performed. Light microscopy of C. pila and its relatives indicated that any early steps towards colony evolution appeared after divergence of TGV from the C. pila lineage. - Microglena redcarensis sp. nov. (Volvocales, Chlorophyceae), a brackish water chlamydomonad with contractile vacuoles
Takashi Nakada; Shunsuke Takahashi; Masaru Tomita
Phycological Research, Oct. 2018
Scientific journal - Morphology and phylogeny of a new wall-less freshwater volvocalean flagellate, Hapalochloris nozakii gen. et sp. nov. (Volvocales, Chlorophyceae).
Takashi Nakada; Masaru Tomita
Journal of phycology, 53, 1, 108, 117, Feb. 2017, [International Magazine]
English, Scientific journal, New strains of a wall-less unicellular volvocalean flagellate were isolated from a freshwater environment in Japan. Observations of the alga, described here as Hapalochloris nozakii Nakada, gen. et sp. nov., were made using light, fluorescence, and electron microscopy. Each vegetative cell had two flagella, four contractile vacuoles, and a spirally furrowed cup-shaped chloroplast with an axial pyrenoid, and mitochondria located in the furrows. Based on the morphology, H. nozakii was distinguished from other known wall-less volvocalean flagellates. Under electron microscopy, fibrous material, instead of a cell wall and dense cortical microtubules, was observed outside and inside the cell membrane, respectively. Based on the phylogenetic analyses of 18S rRNA gene sequences, H. nozakii was found to be closely related to Asterococcus, Oogamochlamys, Rhysamphichloris, and "Dunaliella" lateralis and was separated from other known wall-less flagellate volvocaleans, indicating independent secondary loss of the cell wall in H. nozakii. In the combined 18S rRNA and chloroplast gene tree, H. nozakii was sister to Lobochlamys. - Phylogenetic Position and Molecular Chronology of a Colonial Green Flagellate, Stephanosphaera pluvialis (Volvocales, Chlorophyceae), among Unicellular Algae.
Hidehito Munakata; Takashi Nakada; Kenji Nakahigashi; Hisayoshi Nozaki; Masaru Tomita
The Journal of eukaryotic microbiology, 63, 3, 340, 8, May 2016, [International Magazine]
English, Scientific journal, The genus Balticola comprises a group of unicellular green flagellate algae and is composed of four species formerly classified in the genus Haematococcus. Balticola is closely related to a colonial green flagellate, Stephanosphaera pluvialis. Although the phylogeny among these genera was previously investigated based on two nuclear gene sequences, the phylogenetic sister of S. pluvialis has yet to be determined. In the present study, the species diversity of Balticola and Stephanosphaera was investigated using 18S rRNA gene sequences, and phylogenetic analyses of combined nuclear and chloroplast gene sequences were performed to understand the evolutionary origin of coloniality in Stephanosphaera. The divergence times of four colonial volvocalean flagellates from their respective unicellular sisters were also estimated. Six Balticola genotypes and a single Stephanosphaera genotype were recognized, and one Balticola genotype was resolved as the sister of S. pluvialis, showing that Balticola is a nonmonophyletic genus. The divergence time of Stephanosphaera from its nearest Balticola relative was estimated to be 4-63 million years ago, and these genera represent the most recently diverged pair of unicellular and colonial flagellates among the Volvocales. - Taxonomic revision of Chlamydomonas subg. Amphichloris (Volvocales, Chlorophyceae), with resurrection of the genus Dangeardinia and descriptions of Ixipapillifera gen. nov. and Rhysamphichloris gen. nov.
Takashi Nakada; Masaru Tomita; Jiunn-Tzong Wu; Hisayoshi Nozaki
Journal of phycology, 52, 2, 283, 304, Apr. 2016, [International Magazine]
English, Scientific journal, Chlamydomonas (Cd.) is one of the largest but most polyphyletic genera of freshwater unicellular green algae. It consists of 400-600 morphological species and requires taxonomic revision. Toward reclassification, each morphologically defined classical subgenus (or subgroup) should be examined using culture strains. Chlamydomonas subg. Amphichloris is characterized by a central nucleus between two axial pyrenoids, however, the phylogenetic structure of this subgenus has yet to be examined using molecular data. Here, we examined 12 strains including six newly isolated strains, morphologically identified as Chlamydomonas subg. Amphichloris, using 18S rRNA gene phylogeny, light microscopy, and mitochondria fluorescent microscopy. Molecular phylogenetic analyses revealed three independent lineages of the subgenus, separated from the type species of Chlamydomonas, Cd. reinhardtii. These three lineages were further distinguished from each other by light and fluorescent microscopy-in particular by the morphology of the papillae, chloroplast surface, stigmata, and mitochondria-and are here assigned to three genera: Dangeardinia emend., Ixipapillifera gen. nov., and Rhysamphichloris gen. nov. Based on the molecular and morphological data, two to three species were recognized in each genus, including one new species, I. pauromitos. In addition, Cd. deasonii, which was previously assigned to subgroup "Pleiochloris," was included in the genus Ixipapillifera as I. deasonii comb. nov. - Taxonomic revision of oil-producing green algae, Chlorococcum oleofaciens (Volvocales, Chlorophyceae), and its relatives.
Yuriko Kawasaki; Takashi Nakada; Masaru Tomita
Journal of phycology, 51, 5, 1000, 16, Oct. 2015, [International Magazine]
English, Scientific journal, Historically, species in Volvocales were classified based primarily on morphology. Although the taxonomy of Chlamydomonas has been re-examined using a polyphasic approach including molecular phylogeny, that of Chlorococcum (Cc.), the largest coccoid genus in Volvocales, has yet to be reexamined. Six species thought to be synonymous with the oil-producing alga Cc. oleofaciens were previously not confirmed by molecular phylogeny. In this study, seven authentic strains of Cc. oleofaciens and its putative synonyms, along with 11 relatives, were examined based on the phylogeny of the 18S ribosomal RNA (rRNA) gene, comparisons of secondary structures of internal transcribed spacer 1 (ITS1) and ITS2 rDNA, and morphological observations by light microscopy. Seven 18S rRNA types were recognized among these strains and three were distantly related to Cc. oleofaciens. Comparisons of ITS rDNA structures suggested possible separation of the remaining four types into different species. Shapes of vegetative cells, thickness of the cell walls in old cultures, the size of cells in old cultures, and stigma morphology of zoospores also supported the 18S rRNA grouping. Based on these results, the 18 strains examined were reclassified into seven species. Among the putative synonyms, synonymy of Cc. oleofaciens, Cc. croceum, and Cc. granulosum was confirmed, and Cc. microstigmatum, Cc. rugosum, Cc. aquaticum, and Cc. nivale were distinguished from Cc. oleofaciens. Furthermore, another related strain is described as a new species, Macrochloris rubrioleum sp. nov. - New "missing link" genus of the colonial volvocine green algae gives insights into the evolution of oogamy
Hisayoshi Nozaki; Toshihiro K. Yamada; Fumio Takahashi; Ryo Matsuzaki; Takashi Nakada
BMC EVOLUTIONARY BIOLOGY, 14, 1, 37, Mar. 2014, [Peer-reviewed]
English, Scientific journal - DESCRIPTION OF TWO NEW MONOECIOUS SPECIES OF VOLVOX SECT. VOLVOX (VOLVOCACEAE, CHLOROPHYCEAE), BASED ON COMPARATIVE MORPHOLOGY AND MOLECULAR PHYLOGENY OF CULTURED MATERIAL.
Nanako Isaka; Hiroko Kawai-Toyooka; Ryo Matsuzaki; Takashi Nakada; Hisayoshi Nozaki
Journal of phycology, 48, 3, 759, 67, Jun. 2012, [International Magazine]
English, Scientific journal, Species of Volvox sect. Volvox (Volvocaceae, Chlorophyceae) are unique because they have thick cytoplasmic bridges between somatic cells and spiny-walled zygotes. This section is taxonomically important because the genus Volvox is polyphyletic. However, taxonomic studies of species in Volvox sect. Volvox have not been carried out on cultured material. Here, we performed a taxonomic study of monoecious species of Volvox sect. Volvox based on the comparative morphology and molecular phylogeny of chloroplast genes and the internal transcribed spacer (ITS) regions of nuclear rDNA using various strains originating from Japan and two preserved strains from the USA. The strains were clearly divided into four species, V. globator L., V. barberi W. Shaw, V. kirkiorum sp. nov., and V. ferrisii sp. nov., on the basis of differences in numbers of zygotes (eggs) in the sexual spheroids, form of zygote wall, and somatic cell shape. Sequences for ITS of nuclear rDNA resolved that the two new species have phylogenetic positions separated from V. globator, V. barberi, V. capensis F. Rich et Pocock, and V. rousseletii G. S. West UTEX 1862 within Volvox sect. Volvox. - EVOLUTIONARY ORIGIN OF GLOEOMONAS (VOLVOCALES, CHLOROPHYCEAE), BASED ON ULTRASTRUCTURE OF CHLOROPLASTS AND MOLECULAR PHYLOGENY
Hisayoshi Nozaki; Takashi Nakada; Shin Watanabe
JOURNAL OF PHYCOLOGY, 46, 1, 195, 200, Feb. 2010, [Peer-reviewed]
English, Scientific journal - Recharacterization of Chlamydomonas reinhardtii and its relatives with new isolates from Japan.
Takashi Nakada; Haruka Shinkawa; Takuro Ito; Masaru Tomita
Journal of plant research, 123, 1, 67, 78, Jan. 2010, [Domestic magazines]
English, Scientific journal, Chlamydomonas reinhardtii P. A. Dang. (Volvocales, Chlorophyceae) is one of the most intensely studied algae, and its whole genome was sequenced. Although this species was originally described based on materials from France and is often referred to as a cosmopolitan species, all culture strains available today have been isolated from eastern North America. The distinctions with similar and/or closely related species, such as Chlamydomonas globosa J. Snow and Chlamydomonas orbicularis E. G. Pringsh., are also contentious. In this study, new strains of C. reinhardtii and C. globosa were isolated from Japan and compared with several strains similar to C. reinhardtii. Based on the morphological, genealogical, phylogenetical, and mating studies including the new Japanese strains, the circumscription of C. reinhardtii was clarified. C. reinhardtii was most closely related to C. globosa, and they were shown to be different species. Although C. reinhardtii was similar to C. orbicularis, the authentic strain of C. orbicularis was morphologically distinguishable and phylogenetically distant from C. reinhardtii. Discovery of the Japanese strains of C. reinhardtii supports the cosmopolitan distribution of this species. Based on Japanese strains and/or strains from other countries, emended descriptions of C. reinhardtii, C. globosa, and C. orbicularis are given. - Another origin of coloniality in volvocaleans: the phylogenetic position of Pyrobotrys arnoldi (Spondylomoraceae, Volvocales).
Takashi Nakada; Hisayoshi Nozaki; Masaru Tomita
The Journal of eukaryotic microbiology, 57, 4, 379, 82, 2010, [International Magazine]
English, Scientific journal, Colonial volvocaleans (Chlorophyceae) are used as a standard model of multicellular evolution. However, the phylogenetic position of the colonial volvocalean family Spondylomoraceae has yet to be resolved. To examine this, the molecular phylogenies of Pyrobotrys stellata and Pyrobotrys squarrosa were analyzed using combined 18S rRNA, RUBISCO large subunit, and P700 chl a-apoprotein A2 gene sequences. In the phylogenetic trees, Pyrobotrys belonged to the clade Caudivolvoxa and was not closely related to other colonial volvocalean flagellates. The results indicate that colony formation of Spondylomoraceae independently evolved from unicellular volvocaleans. The phylogenetic position of problematic "Pascherina tetras" SAG 159-1 was also analyzed. - TAXONOMIC STUDY OF TWO NEW GENERA OF FUSIFORM GREEN FLAGELLATES, TABRIS GEN. NOV. AND HAMAKKO GEN. NOV. (VOLVOCALES, CHLOROPHYCEAE).
Takashi Nakada; Hisayoshi Nozaki
Journal of phycology, 45, 2, 482, 92, Apr. 2009, [International Magazine]
English, Scientific journal, On the basis of LM, we isolated strains of two species of fusiform green flagellates that could be assigned to former Chlorogonium (Cg.) Ehrenb. One species, "Cg."heimii Bourr., lacked a pyrenoid in its vegetative cells and required organic compounds for growth. The other was similar to Cg. elongatum (P. A. Dang.) Francé and "Cg."acus Nayal, but with slightly smaller vegetative cells. Their molecular phylogeny was also studied based on combined 18S rRNA, RUBISCO LSU (rbcL), and P700 chl a-apoprotein A2 (psaB) gene sequences. Both species were separated from Chlorogonium emend., Gungnir Nakada and Rusalka Nakada, which were formerly assigned to Chlorogonium. They were accordingly assigned to new genera, Tabris Nakada gen. nov. and Hamakko (Hk.) Nakada gen. nov. as T. heimii (Bourr.) Nakada comb. nov. and Hk. caudatus Nakada sp. nov., respectively. Tabris is differentiated from other genera of fusiform green flagellates by its vegetative cells, which only have two apical contractile vacuoles and lack a pyrenoid in the chloroplast. Hamakko, on the other hand, is distinguishable by the fact that its pyrenoids in vegetative cells are penetrated by flattened thylakoid lamellae. - Molecular systematics of Volvocales (Chlorophyceae, Chlorophyta) based on exhaustive 18S rRNA phylogenetic analyses (vol 48, pg 281, 2008)
Takashi Nakada; Kazuharu Misawa; Hisayoshi Nozaki
MOLECULAR PHYLOGENETICS AND EVOLUTION, 49, 2, 690, 690, Nov. 2008, [Peer-reviewed]
English - Molecular systematics of Volvocales (Chlorophyceae, Chlorophyta) based on exhaustive 18S rRNA phylogenetic analyses.
Takashi Nakada; Kazuharu Misawa; Hisayoshi Nozaki
Molecular phylogenetics and evolution, 48, 1, 281, 91, Jul. 2008, [International Magazine]
English, Scientific journal, The taxonomy of Volvocales (Chlorophyceae, Chlorophyta) was traditionally based solely on morphological characteristics. However, because recent molecular phylogeny largely contradicts the traditional subordinal and familial classifications, no classification system has yet been established that describes the subdivision of Volvocales in a manner consistent with the phylogenetic relationships. Towards development of a natural classification system at and above the generic level, identification and sorting of hundreds of sequences based on subjective phylogenetic definitions is a significant step. We constructed an 18S rRNA gene phylogeny based on 449 volvocalean sequences collected using exhaustive BLAST searches of the GenBank database. Many chimeric sequences, which can cause fallacious phylogenetic trees, were detected and excluded during data collection. The results revealed 21 strongly supported primary clades within phylogenetically redefined Volvocales. Phylogenetic classification following PhyloCode was proposed based on the presented 18S rRNA gene phylogeny along with the results of previous combined 18S and 26S rRNA and chloroplast multigene analyses. - MOLECULAR PHYLOGENY, ULTRASTRUCTURE, AND TAXONOMIC REVISION OF CHLOROGONIUM (CHLOROPHYTA): EMENDATION OF CHLOROGONIUM AND DESCRIPTION OF GUNGNIR GEN. NOV. AND RUSALKA GEN. NOV.
Takashi Nakada; Hisayoshi Nozaki; Thomas Pröschold
Journal of phycology, 44, 3, 751, 60, Jun. 2008, [International Magazine]
English, Scientific journal, We examined the molecular phylogeny and ultrastructure of Chlorogonium and related species to establish the natural taxonomy at the generic level. Phylogenetic analyses of 18S rRNA and RUBISCO LSU (rbcL) gene sequences revealed two separate clades of Chlorogonium from which Chlorogonium (Cg.) fusiforme Matv. was robustly separated. One clade comprised Cg. neglectum Pascher and Cg. kasakii Nozaki, whereas the other clade included the type species Cg. euchlorum (Ehrenb.) Ehrenb., Cg. elongatum (P. A. Dang.) Francé, and Cg. capillatum Nozaki, M. Watanabe et Aizawa. On the basis of unique ultrastructural characteristics, we described Gungnir Nakada gen. nov. comprising three species: G. neglectum (Pascher) Nakada comb. nov., G. mantoniae (H. Ettl) Nakada comb. nov., and G. kasakii (Nozaki) Nakada comb. nov. We also emended Chlorogonium as a monophyletic genus composed of Cg. euchlorum, Cg. elongatum, and Cg. capillatum. Because Cg. fusiforme was distinguished from the redefined Chlorogonium and Gungnir by the structure of its starch plate, which is associated with pyrenoids, we reclassified this species as Rusalka fusiformis (Matv.) Nakada gen. et comb. nov. - Re-evaluation of three Chlorogonium (Volvocales, Chlorophyceae) species based on 18S ribosomal RNA gene phylogeny
Takashi Nakada; Hisayoshi Nozaki
EUROPEAN JOURNAL OF PHYCOLOGY, 42, 2, 177, 182, May 2007, [Peer-reviewed]
English, Scientific journal
- アオミドロ語誌参考文献一覧
仲田 崇志; 北山 太樹, 藻類 = The Japanese journal of phycology, 71, 3, 170, 172, 10 Nov. 2023
高知 : 日本藻類学会, Japanese - 『国際藻類・菌類・植物命名規約』(深圳規約)に対する修正提案025~050の紹介—Introduction to proposals (025-050) to amend the International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code)
仲田 崇志, 藻類 = The Japanese journal of phycology, 69, 2, 83, 85, 10 Jul. 2021
高知 : 日本藻類学会, Japanese - 『国際藻類・菌類・植物命名規約』の改正と修正提案001~024の紹介—Brief introduction to proposals (001-024) to amend the International Code of Nomenclature for algae, fungi, and plants
仲田 崇志, 藻類 = The Japanese journal of phycology, 69, 2, 79, 82, 10 Jul. 2021, [Peer-reviewed]
高知 : 日本藻類学会, Japanese - 江戸後期の辞書『永代節用無尽蔵』』における藻類の和名と漢名—Japanese and kanji names found in a dictionary, Eitai Setsuyo Mujinzo (Inexhaustible Eternal Word Collection for Everyday Use), published in the early 19th century
仲田 崇志, 藻類 = The Japanese journal of phycology, 69, 1, 1, 9, 10 Mar. 2021
高知 : 日本藻類学会, Japanese - 衣料繊維または粘着テープを支持体として用いた微細藻類生細胞の顕微鏡観察法—Methods for supporting cover slip during light microscopy of unfixed microalgae, using clothing fibers or adhesive tapes
仲田 崇志, 藻類 = The Japanese journal of phycology, 66, 3, 157, 163, 10 Nov. 2018
高知 : 日本藻類学会, Japanese - Morphology and Phylogeny of a Japanese Strain of Chlamydomonas augustae (Volvocales, Chlorophyceae): 日本新産Chlamydomonas augustae(緑藻綱,オオヒゲマワリ目)の形態と系統
Shunsuke Takahashi; Masaru Tomita; Takashi Nakada, The Journal of Japanese Botany, 93, 5, 317, 321, Oct. 2018
Chlamydomonas augustae (Volvocales, Chlorophyceae) is a unicellular biflagellate alga, with a stellate chloroplast containing a pyrenoid. Based on light microscopy and 18S rRNA gene phylogeny, a strain isolated from a paddy field in Chiba, Japan, was identified as this species, which had not previously been recorded in Japan. This Japanese strain was more closely related to the geographically distant European strains than to the Asian (Indonesian) strain., The Editorial Board of The Journal of Japanese Botany, English - 藻類と学名 中国・深圳で決まった国際藻類・菌類・植物命名規約の改正点概要
仲田 崇志, 藻類 = The Japanese journal of phycology, 65, 3, 159, 162, 10 Nov. 2017
高知 : 日本藻類学会, Japanese - 藻類学における和名の発表と使用を推進するために—Promoting publication and usage of "Wamei", Japanese names, in phycology—特集 生物和名における問題 : 藻類編
仲田 崇志, 海洋と生物 = Aquabiology, 39, 3, 239, 242, Jun. 2017
東京 : 生物研究社, Japanese - 18S Ribosomal RNA Gene Phylogeny of a Colonial Volvocalean Lineage (Tetrabaenaceae-Goniaceae-Volvocaceae, Volvocales, Chlorophyceae) and Its Close Relatives: 群体性オオヒゲマワリ系統(緑藻綱,オオヒゲマワリ目,テトラバエナ科・ヒラタヒゲマワリ科・オオヒゲマワリ科)および近縁種の18SリボソームRNA遺伝子系統: 創刊100周年記念号
Takashi Nakada; Takuro Ito; Masaru Tomita, The Journal of Japanese Botany, 91, Suppl, 345, 354, Dec. 2016
The lineage of colonial green algae consisting of Tetrabaenaceae, Goniaceae, and Volvocaceae (TGV-clade) belongs to the clade Reinhardtinia within Volvocales (Chlorophyceae). Reinhardtinia is closely related to some species in the unicellular genera Chlamydomonas and Vitreochlamys. Although 18S rRNA gene sequences are preferred phylogenetic markers for many volvocalean species, phylogenetic relationships among the TGV-clade and its relatives have been examined mainly based on chloroplast genes and ITS2 sequences. To determine the candidate unicellular sister, 18S rRNA gene sequences of 41 species of the TGV-clade and its relatives were newly determined, and single and 6-gene phylogenetic analyses performed. No unicellular sister was determined by 18S rRNA gene analyses, but 6 unicellular clades and 11 ribospecies were recognized as candidates. Five of the candidate lineages and 27 taxa of the TGV-clade were examined by 6-gene phylogeny, revealing one clade including Chlamydomonas reinhardtii, Chlamydomonas debaryana, and Vitreochlamys ordinata to be more closely related than that containing Vitreochlamys aulata and Vitreochlamys pinguis., The Editorial Board of The Journal of Japanese Botany, English - Proposals of a New Combination and a Valid Name for Two Bangiales Taxa (Rhodophyta) Used for Nori Cultivation in Japan: ノリ養殖に使用される紅藻ウシケノリ目2分類群の新組合せ及び新学名の提案
Norio Kikuchi; Takashi Nakada; Kyosuke Niwa, The Journal of Japanese Botany, 90, 6, 380, 385, Dec. 2015
The Editorial Board of The Journal of Japanese Botany, English - 循環型社会に向けた微細藻類のポテンシャル
伊藤 卓朗; 仲田 崇志, Keio SFC journal, 15, 1, 232, 244, 2015
type:text
栄養欠乏などのストレスにより中性脂質を蓄積するオイル産生藻類は, 単位面積当たりのバイオマス生産量が大きく, 次世代バイオ燃料の原料として期待されている。実用化に向けては安定生産とコスト削減はもちろんのこと, 土地や水, 培地成分などの長期にわたる持続的利用が求められる。本稿では, 休耕田を再利用した藻類の培養に向けた研究と, 代謝改変による高生産株を得るための大規模な代謝解析について紹介する。
特集 世界を救え : SFCバイオの挑戦#招待論文#第3章 SFCが関連するおもしろ生命科学, 慶應義塾大学湘南藤沢学会, Japanese - Researches on taxonomic revisions of Volvocales: (Chlorophyceae)
Nakada Takashi, Microbial Resources and Systematics, 31, 2, 95, 101, 2015
Japan Society for Microbial Resources and Systematics, Japanese - 植物分類学研究マニュアル 淡水微細藻類の採集と培養株の確立
仲田 崇志, BUNRUI, 15, 1, 57, 65, 2015
Japanese Society for Plant Systematics, Japanese - ヘイセイ 26ネンド ジツム ワークショップ 「 ビセイブツ カンリ ニ オケル ガクメイ ニ カンスル モンダイテン 」
Nakada Takashi, Microbial Resources and Systematics, 30, 2, 163, 167, Dec. 2014
コレクション : 国立国会図書館デジタルコレクション > 電子書籍・電子雑誌 > 学術機関 > 学協会, Japan Society for Microbial Resources and Systematics, Japanese - 藻類と学名 アスタキサンチン産生ヘマトコッカス(アカヒゲムシ属:Haematococcus;緑藻綱)の学名 : Haematococcus lacustrisか? Haematococcus pluvialisか?
大田 修平; 仲田 崇志, 藻類 = The Japanese journal of phycology, 62, 1, 7, 10, 10 Mar. 2014
高知 : 日本藻類学会, Japanese - 微生物の命名規約と関連情報(第5回)国際細菌命名規約(1990年版)からの規約改訂と,国際原核生物命名規約への規約名称変更—The alterations since the International Code of Nomenclature of Bacteria (1990 revision), and the renaming to International Code of Nomenclature of Prokaryotes
仲田 崇志, 日本微生物資源学会誌 = Microbial resources and systematics, 28, 2, 135, 147, Dec. 2012
コレクション : 国立国会図書館デジタルコレクション > 電子書籍・電子雑誌 > 学術機関 > 学協会, 千葉 : 日本微生物資源学会, Japanese - Introduction to “Changes to Publication Requirements Made at the XVIII International Botanical Congress in Melbourne: What Does E-Publication Mean for You? Knapp S., McNeill J. and Turland N. J. Taxon 60: 1498-1501, 2011” with Japanese Translation
Takashi Nakada; Hidetoshi Nagamasu; Hiroyoshi Ohashi, The Journal of Japanese Botany, 87, 1, 71, 76, 20 Feb. 2012
The Editorial Board of The Journal of Japanese Botany, Japanese - Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne : what does e-publication mean for you
Knapp Sandra; McNeil John; Turland Nicholas J.; Nakada Takashi; Nagamasu Hidetoshi; Ohashi Hiroyoshi, Bryological Research, 10, 7, 212, 216, 2012
国際植物命名規約(International Code of Botanical Nomenclature)は,国際植物学会議(International Botanical Congress:IBC)の命名法部会で6年ごとに変更されている.第18回IBCはオーストラリアのメルボルンで開催され,命名法部会が2011年7月18日から22日に開かれ,その決定が7月30日の本会議にて採択された.この会議の結果,新学名の発表に影響するいくつかの重要な規約変更が行われた.このうち二つの変更はメルボルン規約の出版より数ヶ月早く,2012年1月1日から発効する.国際標準逐次刊行物番号(ISSN)または国際標準書籍番号(ISBN)を伴ってPortable Document Format(PDF)の形式でオンライン発表された電子資料は有効発表となり,新分類群の学名に対する要件であるラテン語の記載文または判別文は,ラテン語または英語による記載文または判別文へと変更される.さらに,2013年1月1日から効力をもつが,菌類として扱われる生物の新学名が正式発表されるためには,初発表文(protologue:学名の正式発表に際して,その学名に関連して発表された全てのもの)の中に,認定された登録機関(例:MycoBank)の発行する識別子identifierの引用を含まなければならなくなる.電子発表に関する新たな条項の草案を示し,最良慣行(訳注:最適な結果を得るための方法や手順などBestpractice)について概説する., The Bryological Society of Japan, Japanese - Introduction to "Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne: what does e-publication mean for you. Knapp, S., McNeill, J. & Turland, NJ. Taxon 60: 1498-1501, 2011" with Japanese translation
Nakada Takashi; Nagamasu Hidetoshi; Ohashi Hiroyoshi, Bryological Research, 10, 7, 211, 2012
The Bryological Society of Japan, Japanese - 「第18回国際植物学会議(メルボルン)で変更された発表の要件:電子発表の意味するところ(Changes to publication requirements made at the ⅩⅧ International Botanical Congress in Melbourne : what does e-publication mean for you. Knapp, S., McNeill, J. and Turland, N.J., Taxon, 60, 1498-1501, 2011)」の紹介と日本語訳
仲田 崇志; 永益 英敏; 大橋 広好, Fossils, 91, 60, 63, 2012
Palaeontological Society of Japan, Japanese - Light microscopy and phylogenetic analyses of Chlamydomonas species (Volvocales, Chlorophyceae). I. Chlamydomonas pseudomacrostigma and Chlamydomonas media.
仲田 崇志, Acta Phytotaxonomica et Geobotanica, 62, 69, 78, 2012, [Peer-reviewed] - 「第18回国際植物学会議(メルボルン)で変更された発表の要件 : 電子発表の意味するところ (Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne : what does e-publication mean for you. Knapp, S., McNeill, J. & Turland, N. J. Taxon 60 : 1498-1501, 2011)」の紹介と日本語訳
仲田 崇志; 永益 英敏; 大橋 広好, 藻類 = The bulletin of Japanese Society of Phycology, 59, 3, 163, 10 Nov. 2011
Japanese - Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne: What does e-publication mean for you?
Knapp Sandra; McNeill John; Turland Nicholas J.; Nakada Takashi; Nagamasu Hidetoshi; Ohashi Hiroyoshi, Microbial Resources and Systematics, 27, 2, 91, 95, 2011
国際植物命名規約(International Code of Botanical Nomenclature)は,国際植物学会議(International Botanical Congress: IBC)の命名法部会で 6 年ごとに変更されている.第 18 回 IBC はオーストラリアのメルボルンで開催され,命名法部会が 2011 年 7 月 18 日から 22 日に開かれ,その決定が 7 月 30 日の本会議にて採択された.この会議の結果,新学名の発表に影響するいくつかの重要な規約変更が行われた.このうち二つの変更はメルボルン規約の出版より数ヶ月早く,2012 年 1 月 1 日から発効する.国際標準逐次刊行物番号(ISSN)または国際標準書籍番号(ISBN)を伴って Portable Document Format(PDF)の形式でオンライン発表された電子資料は有効発表となり,新分類群の学名に対する要件であるラテン語の記載文または判別文は,ラテン語または英語による記載文または判別文へと変更される.さらに,2013 年 1 月 1 日から効力をもつが,菌類として扱われる生物の新学名が正式発表されるためには,初発表文(protologue:学名の正式発表に際して,その学名に関連して発表された全てのもの)の中に,認定された登録機関(例:MycoBank)の発行する識別子 identifier の引用を含まなければならなくなる.電子発表に関する新たな条項の草案を示し,最良慣行(訳注:最適な結果を得るための方法や手順など.Best practice)について概説する., Japan Society for Microbial Resources and Systematics, Japanese - Introduction to “Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne: What does e-publication mean for you. Knapp, S., McNeill, J. & Turland, N.J. Taxon 60: 1498-1501, 2011” with Japanese translation
Nakada Takashi; Nagamasu Hidetoshi; Ohashi Hiroyoshi, Microbial Resources and Systematics, 27, 2, 89, 90, 2011
Japan Society for Microbial Resources and Systematics, Japanese - 藻類学最前線 トゲと群体とクロレラの分類
仲田 崇志, 藻類 = The Japanese journal of phycology, 58, 2, 129, 132, 10 Jul. 2010
高知 : 日本藻類学会, Japanese - Towards a reconstruction of classification system of unicellular members of Volvocales
NAKADA Takashi, BUNRUI, 10, 2, 125, 138, 2010
Japanese Society for Plant Systematics, Japanese - A proposal on the designation of cultures of fungi and algae as types.
仲田 崇志, Taxon, 59, 983, 2010 - Volvulina compacta(Volvocaceae, Chlorophyceae),new to Japan, and its phylogenetic position.
仲田 崇志, J.Jpn.Bot. 85, 364, 369, 2010, [Peer-reviewed] - Culture dependent research of microalgae and typification under the International Code of Botanical Nomenclature (Vienna Code)
Nakada Takashi, Microbial Resources and Systematics, 26, 2, 109, 116, 2010
コレクション : 国立国会図書館デジタルコレクション > 電子書籍・電子雑誌 > 学術機関 > 学協会, Japan Society for Microbial Resources and Systematics, Japanese - 新規有用株の確立とシステム生物学による代謝制御機構の解明 オイル産生微細藻の産業利用
伊藤 卓朗; 仲田 崇志; 佐藤 暖, クリーンエネルギー / クリーンエネルギー編集委員会 編, 18, 8, 60, 64, Aug. 2009
東京 : 日本工業出版, Japanese - Two species of Chlamydomonas (Volvocales, Chlorophyceae) new to Japan: コナミドリムシ属(Chlamydomonas;緑藻綱,オオヒゲマワリ目)の日本新産2種について
82, 4, 179, 189, Aug. 2007, [Peer-reviewed]
English - 生物界の変遷と変形菌
仲田 崇志, 変形菌 = The myxomycetes / 日本変形菌研究会 編, 25, 25, 36, Jul. 2007
越前町 (福井県) : 日本変形菌研究会, Japanese - Morphology and Molecular Phylogeny of Gonium multicoccum (Volvocales, Chlorophyceae) Newly Found in Japan: 日本新産Gonium multicoccum(緑藻綱,オオヒゲマワリ目)の形態と分子系統
Toshihiro K. YAMADA; Takashi NAKADA; Kazuyuki MIYAJI; Hisayoshi NOZAKI, The Journal of Japanese Botany, 81, 3, 139, 147, Jun. 2006
The Editorial Board of The Journal of Japanese Botany, English - Two Species of Chlorogonium (Volvocales, Chlorophyceae) from Japan: 日本産ヤリミドリ属(オオヒゲマワリ目,緑藻綱)2種について
Takashi NAKADA; Atsusi NAKAZAWA; Hisayoshi NOZAKI, The Journal of Japanese Botany, 80, 4, 197, 207, Aug. 2005, [Peer-reviewed]
The Editorial Board of The Journal of Japanese Botany, English - 研究室探訪 : 第10回
江口, 徹; 仲田, 崇志, 東京大学理学系研究科・理学部ニュース, 36, 4, 12, 21, 20 Nov. 2004
application/pdf
理論で「ひも」解く宇宙, 東京大学大学院理学系研究科・理学部, Japanese - 稀産種カクアミウツボホコリArcyria nigellaについて
仲田 崇志, 変形菌 = The myxomycetes / 日本変形菌研究会 編, 19, 4, 7, Dec. 2002
越前町 (福井県) : 日本変形菌研究会, Japanese
- 分類学概論, 2024年, 修士課程, 理学院
- 多様性生物学特論Ⅱ, 2024年, 修士課程, 理学院
- 多様性生物学研究法, 2024年, 修士課程, 理学院
- 科学・技術の世界(1単位), 2024年, 学士課程, 全学教育
- 生物多様性概論, 2024年, 学士課程, 理学部
- 環境と人間, 2024年, 学士課程, 全学教育
- 多様性生物学Ⅰ, 2024年, 学士課程, 理学部
- 臨海実習Ⅱ, 2024年, 学士課程, 理学部
- ISP生物科学実習Ⅰ・a, 2024年, 学士課程, 理学部
- ISP生物科学実習Ⅰ・b, 2024年, 学士課程, 理学部
- 植物系統分類学実習, 2024年, 学士課程, 理学部
- 植物系統分類学実習, 2024年, 学士課程, 総合教育部
- 系統分類学b, 2024年, 学士課程, 理学部
- 系統分類学b, 2024年, 学士課程, 理学部
- 系統分類学Ⅱ, 2024年, 学士課程, 理学部
- 系統分類学Ⅱ, 2024年, 学士課程, 理学部
- 多様性生物学Ⅱ, 2024年, 学士課程, 理学部
- 生物学Ⅱ, 2024年, 学士課程, 全学教育
- ミクログレナ属藻類(緑藻綱)の分類学的見直しと好塩性・好冷性の系統進化
科学研究費助成事業
01 Apr. 2019 - 31 Mar. 2022
仲田 崇志
本研究では,単細胞性藻類の中でも,淡水から汽水・海氷に広く分布するミクログレナ属を対象に,藻類の生息可能環境や至適環境の実態とその進化過程の解明を目指した。
2021年度には入手したミクログレナ属藻類7種の培養株について,淡水・汽水(1/5海水相当)・海水を模した培地中の,それぞれ15℃,20℃における増殖比較を進めた。期間終了時点では培地の色による定性的判断まで行い,固定試料を保存した。
その結果,淡水由来の 6 株中 4 株は,いずれの温度でも淡水でのみ増殖し,汽水においては増殖が認められなかった。また 1 株は,いずれの温度でも淡水で最もよく増殖したが,汽水での増殖も認められ,海水では増殖しなかった。以上の5株においては,15℃よりも20℃でより速く増殖した。淡水産の残り 1 株は,15℃では海水において最もよく増殖し,次いで汽水でよく増殖したが,20℃においては汽水において最もよく増殖し,次いで淡水でやや増殖し,海水においてはほとんど増殖が認められなかった。またこの株は,同じ塩分濃度では20℃よりも15℃でより速く増殖した。海水由来の1株は,汽水・海水において増殖が認められ,特に20℃の海水において良好な増殖を示した。
すなわち,培養株(種)によって至適温度・至適塩分濃度に差があり,また特定の種では至適塩分濃度が培養温度によって変化することが示された。この株は,系統的には海産系統から淡水系統への進化途上にある種と推定され,好冷性の種と近縁であった。
今後,本研究で得られた固定試料を用いた細胞計数を進め,定量的なデータと共に英文論文として発表したい。
また本研究の前提となる分類学的基礎研究として,「国際藻類・菌類・植物命名規約」の改訂に関して,Taxon誌2020年12月号に掲載された修正提案を紹介・解説するミニレビューが日本藻類学会和文誌「藻類」に受理・掲載された。
日本学術振興会, 基盤研究(C), 横浜国立大学, 19K06813 - Research on physiological differentiation among closely related unicellular green algae
Grants-in-Aid for Scientific Research
2010 - 2012
NAKADA Takashi
Several new strains of volvocalean algae, a major freshwater microalgal group, were established, and their morphological and phylogenetical properties were clarified. Three lineages including the new strains were selected and examined for the growth exami
Japan Society for the Promotion of Science, Grant-in-Aid for Young Scientists (B), Keio University, 22770086 - Biofuel creation by oil-producing microalgae ~Improvement method in lipid production of oil-producing microalgae by UVR~
Grants-in-Aid for Scientific Research
2010 - 2012
OHI Nobuaki; NAKADA Takashi; ITO Takuro; SATO Dan
Oceanic oil-producing microalgae has been focused for solution of global warming and energy problems. Microalgae are highly biofuel producer than plant biomass, no competition with food and growing ocean water. A part of microalgae accumulate oil by stress conditions and its oil-contents are variety by species. We had conducted screening of highly oil-producing marine microalgae and discovered potentiality strains as biofuel. We have developed the metabolomics and lipidomics analysis method for oceanic microalge to elucidate mechanisms of oil-accumulation by photooxidation stress to improve oil-production.
Japan Society for the Promotion of Science, Grant-in-Aid for Scientific Research (C), 22612003
